The Pritzker School of Molecular Engineering (PME) Divisional Student Manual is a set of academic policies and requirements that apply to all students in the molecular engineering doctoral program.
Current students can find more details about the programmatic requirements and policies on the PME PhD Students intranet site.
In addition to this manual, please review the following web pages for specific aspects of our program:
|If you are looking for...||Visit|
|An overview of our courses and the core competencies they build||Courses and Core Competencies|
|Detailed course descriptions and instructor and prerequisite information||Graduate Announcements|
|University policies and regulations||University Student Manual|
Students entering the Pritzker Molecular Engineering (PME) PhD program in 2021 or later are expected to fulfill the following course requirements. Courses used to meet program requirements must be completed with grades of B or higher.
- Three Thematic Core Courses
- Four In-Depth Courses (related to your chosen research field)
- Two Broad Elective Courses
In consultation with their Primary Research Advisor(s) and Primary Academic Advisor (if applicable), students select core, in-depth, and elective courses from a portfolio of graduate level courses.
In order to be eligible for candidacy, students must complete all Thematic Core and In-Depth Courses by the end of Winter Quarter of the second year. Students are strongly urged to complete at least half of their course requirements in the first year.
Thematic Core Courses, designed specifically for students in each of the three PME research themes, teach fundamental principles, methodologies, and/or systems. These courses aim to provide a foundation for advanced coursework and research in the thematic areas.
|Immuno-Engineering (3)||MENG 33100||Biological Materials|
|MENG 33200||Principles of Immunology|
|Choose one of the following:|
|1. MENG 33110||Stem Cell Biology, Regeneration, and Disease Modeling|
|2. MENG 33130||Proteomics and Genomics in Biomolecular Engineering|
|Materials Systems for Sustainability and Health (3)||MENG 31100||Math Methods in Molecular Engineering|
|Choose two of the following:|
|1.MENG 31200||Thermodynamics and Statistical Mechanics|
|2.MENG 31300||Transport Phenomena|
|3.MENG 35100||Introduction to Polymer Science|
|CHEM 39000||Solids, Materials, Surfaces|
|Quantum Engineering (3)||MENG 31400||Advanced Quantum Engineering|
|PHYS 34100||Graduate Quantum Mechanics-1*|
|PHYS 34200||Graduate Quantum Mechanics-2|
*Students who have already taken an advanced quantum class can replace PHYS 34100 with either MENG 37400 Advanced Quantum Information or MENG 37200 Quantum Dissipation and Quantum Measurement.
PME Interdisciplinary Core Courses*, designed specifically for PME students, teach fundamental principles, methodologies, and/or systems that serve multiple engineering fields. These courses foster interdisciplinary understanding and collaboration.
- MENG 31100 Math Methods in Molecular Engineering
- MENG 31200 Thermodynamics and Statistical Mechanics
- MENG 31300 Transport Phenomena
- MENG 31400 Advanced Quantum Engineering
- MENG 33100 Biological Materials
- MENG 35100 Introduction to Polymer Science
- MENG 36600 Electronic and Quantum Materials for Technology
*Students who matriculated prior to Autumn 2021 are expected to complete a total of three Interdisciplinary Core courses in place of the Thematic Core course requirement.
In-Depth Courses can include PME courses as well as courses from fellow STEM departments such as physics, chemistry, biophysics, computer science, and biological sciences. These courses give students specialized knowledge in their research field of choice. In-depth courses must be graduate-level and can be in any STEM area with the approval of the research adviser.
Broad Elective Courses serve to help students develop skills in leadership, communication, technology development, and product design. They also serve to help students acquire or renew basic understanding in STEM subject areas. Students should also consider courses in other divisions such as public policy, business, or the humanities.
Note: The PME-only section of ENGL 30000 Academic and Professional Writing (Little Red Schoolhouse) offered in Autumn may not be counted toward PME graduation requirements because it is not a full, quarter-long course. Interested students are still encouraged to register.
PME graduate students are required to register for and attend MENG 40100, MENG 40200, and MENG 40300 in the Autumn, Winter, and Spring quarters respectively in their first year.
PME Core Sequence covers grand challenges and fundamental science and engineering concepts in the three PME themes -- Immuno-Engineering, Materials Systems for Sustainability and Health, and Quantum Engineering -- from a general interest perspective.
- MENG 40100 Grand Challenges in Molecular Engineering I
- MENG 40200 Grand Challenges in Molecular Engineering II
PME Research Professionalization Seminar (MENG 40300) provides an overview of the types of competencies and non-academic knowledge associated with successful research. Grades for this course are pass/fail and are based on participation and attendance. Students who miss more than two classes and/or who do not complete the Responsible Conduct of Research training receive a failing grade.
All graduate students in the PME participate in the advisor matching process during their first year. The vibrant and diverse research activities pursued by PME faculty members offer students a very broad range of research opportunities. The PME’s highly interdisciplinary environment also provides opportunities to work with multiple faculty members within the school as well as with faculty throughout the University of Chicago and Argonne National Laboratory. Advisors begin working closely with students during their first year of study with annual reviews of progress throughout their studies and research.
There are numerous ways in which students can engage prospective advisors including but not limited to during orientation week at the poster session or match talk presentations; in lab/group meetings, individual faculty meetings, or reading groups; and in their courses. These opportunities give new students an overview of the types of research being pursued at PME, encourage them to consider possibilities for their own interdisciplinary research, and provide students the opportunity to ask questions and engage with individual faculty members whose research interests them most. Students are expected to follow up individually with the advisors they are most interested in working with. They should take the time to review the research that the advisors are working on and to engage the graduate students affiliated with the advisors. Students are strongly encouraged to consider more than one advisor as they engage this process.
Incoming students will need to secure a Primary Research Advisor in their first year and can match with a PME faculty member, a UChicago faculty member not in the PME, or an Argonne scientist approved to supervise students through the GRC. If one of the latter two, students will also need to arrange for a PME faculty member to serve as the Primary Academic Advisor who will be responsible for reviewing the student’s academic progress and serving on all committees related to candidacy and thesis defense. The advisor match will be formally confirmed with the advisor's signature on the PME Advisor Match Form. Once a match with a research advisor has been made, first-year students are expected to consult with their advisors on course selection and progress.
PME graduate students pursue candidacy for the PhD in their second year. Students develop and present a research proposal describing the objectives, approaches, and expected outcomes of their PhD thesis work. To be admitted to candidacy, students must also successfully complete all core courses and all in-depth courses. Altogether, admission to candidacy depends on an evaluation of academic performance, research performance, the research proposal, and oral review.
The proposal should be prepared in the formats outlined by the National Science Foundation or the National Institutes of Health in their guides on grant proposals. It will be presented to a faculty review committee for approval. Students being reviewed shall submit their completed research proposal by the end of January in the winter quarter.
Students will have 25 minutes at the beginning of the review to present without interruptions and shall personally make arrangements for room reservations and any required projection equipment needed for their review. A full two hours will be scheduled for each review.
The Faculty Candidacy Review Committee is composed of three to four faculty members including the student’s Primary Research Advisor and Primary Academic Advisor, if applicable. At least two of the members must be PME faculty. The candidacy committee should be composed in consultation with and approved by the Primary Research Advisor.
Admission to PhD candidacy depends only in part on the results of the proposal and oral review. Performance in research and in coursework is also considered in committee deliberations. The outcome of the candidacy review will be communicated to the student by the committee chair immediately following committee deliberations. There are three possible outcomes for the candidacy review:
- Deficient with opportunity to retake: Students in this category have presented proposals that are promising but have failed to meet the standard of an absolute pass (e.g. missing data, missing coursework, incomplete understanding of the subject matter, etc.). They will be given the opportunity to retake the exam by the end of the Spring Quarter. If the student fails the second attempt, they will no longer be considered in good standing and must leave the graduate program.
- Fail: Students in this category have presented proposals that are well below the standard of an absolute pass and are indicative of an inability to pursue independent research at the doctoral level. They may also be failing in coursework and/or engagement in laboratory research. Such students will not be given the opportunity to retake the exam and are no longer considered to be in good standing. The student must leave the graduate program by the end of the Spring Quarter.
Students who are not admitted to candidacy because of an unsatisfactory proposal, a poor record of research, and/or unsatisfactory coursework performance may appeal the candidacy outcome in a letter to the PME Dean and to the Vice Dean for Education and Outreach. If the student feels that there are extenuating circumstances that should be considered, those reasons should be clearly articulated in the letter of appeal.
Pedagogical training is a component of our doctoral education. The PME requires that all graduate students engage in meaningful teaching experiences. Most students will satisfy this requirement by serving as a teaching assistant (TA). Students are not expected to complete their teaching requirement in their first year, but may be asked to be a TA as needed in any year thereafter. While there is some consideration of student preferences in teaching assignments, assignments overall are determined by departmental need.
- Students who entered the doctoral program in 2017, 2016, 2015, and 2014 must either complete two quarters as a TA or one quarter as a TA and one approved equivalent.
- Students entering the doctoral program after 2017 must either complete two quarters as a TA or one quarter as a TA and two approved equivalents.
Approved teaching equivalents are educational and training programs that support graduate students’ development of pedagogical, mentoring, and teaching competencies. Each of these programs is designed with student-centered learning goals and outcomes, and is supported by research-based curricular materials. Current approved half-credit equivalents include:
Doctoral dissertations are original contributions to scholarship. Every student in the PME PhD program is required to prepare, submit and defend an original dissertation thesis project. Detailed instructions and guidelines on how to meet requirements for University of Chicago dissertations are available in the University's student manual, in the University-Wide Requirements for the PhD Dissertation, and on the Dissertation Office website. Students are urged to review these resources early in the writing process. The final copy of the dissertation must be uploaded to the Dissertation Office site by the deadline specified by the Dissertation Office each quarter.
The Dissertation Defense Committee is composed of three to four faculty members including the student’s Primary Research Advisor and Primary Academic Advisor, if applicable. At least three faculty members from the University of Chicago and at least two faculty members from PME must be on the committee. The thesis committee should be composed in consultation with and approved by the Primary Research Advisor and Primary Academic Advisor, if applicable. The student is responsible for organizing the logistics of the thesis defense.
Students who transfer to the University with their PI and have completed candidacy prior to transferring should provide a list of their committee members to the PME Dean of Students office by the end of their first quarter in residence.
For an up-to-date and complete overview of the timeline and procedures, students should refer to the defense and graduation information sheet on the PME Students Intranet site.
Deadlines for a particular quarter may vary slightly. Be sure to check the Registrar's and Dissertation Office's deadlines for the quarter in which you plan to graduate. Helpful information can be found at the links below.
- Dissertation Checklist
- Dissertation Deadlines
- Grading Deadlines
- Degree Conferral & Convocation Dates
A fee of $65 will be charged for each degree application that is canceled after the end of the fifth week of the quarter in which it is filed. Note: A degree application is valid only for the quarter in which it is made.
The University of Chicago is a community of scholars dedicated to research, academic excellence, and the pursuit and cultivation of learning. Every member of the University—student, faculty, and staff—makes a commitment to strive for personal and academic integrity; to treat others with dignity and respect; to honor the rights and property of others; to take responsibility for individual and group behavior; and to act as a responsible citizen in a free academic community and in the larger society. In this context, complaints, concerns, and allegations of abuse of authority are taken seriously. Confidentially will be preserved when appropriate.